A Companion to Plant Physiology, Fifth Edition by Lincoln Taiz and Eduardo Zeiger
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HOME :: CHAPTER 17 :: Suggested Readings

Suggested Readings

Anderson, S. L., and Kay, S. A. (1995) Functional dissection of circadian clock- and phytochrome-regulated transcription of the Arabidopsis CAB2 gene. Proc. Natl. Acad. Sci. USA 92: 1500–1504.

Ballare, C. L. (1999) Keeping up with the neighbours: Phytochrome sensing and other signalling mechanisms. Trends in Plant Science 4: 97-102.

Barnes, S. A., Quaggio, R. B., and Chua, N-H. (1995) Phytochrome signal-transduction: Characterization of pathways and isolation of mutants. Philos. Trans. R. Soc. London [Biol.] 350: 67–74.

Briggs, W. R., and Olney, M. A. (2001) Photoreceptors in plant photomorphogenesis to date. Five phytochromes, two cryptochromes, one phototropin, and one superchrome. Plant Physiol. 125: 85-88.

Briggs, W. R., Mandoli, D. F., Shinkle, J. R., Kaufman, L. S., Watson, J. C., and Thompson, W. F. (1984) Phytochrome regulation of plant development at the whole plant, physiological, and molecular levels. In Sensory Perception and Transduction in Aneural Organisms. G. Colombetti, F. Lenci, and P.-S. Song, eds., Plenum, New York, pp.265–280.

Chory, J., and Li, J. (1997) Gibberellins, brassinosteroids and light-regulated development. Plant Cell Environ. 20: 801–806.

Chory, J., and Wu, D (2001) Weaving the complex web of signal transduction. Plant Physiol. 125: 77-80.

Chory, J., Cook, R. K., Dixon, R., Elich, T., Li, H. M., Lopez, E., Mochizuki, N., Nagpal, P., Pepper, A., Poole, D., and Reed, J. (1995) Signal transduction pathways controlling light-regulated development inArabidopsis. Philos. Trans. R. Soc. London [Biol.] 350: 59–65.

Clouse, S. D. (1996) Molecular genetic studies confirm the role of brassinosteroids in plant growth and development. Plant J. 10: 1–8.

Elich, T. D., and Chory, J. (1994) Initial events in phytochrome signaling: Still in the dark. Plant Mol. Biol. 26: 1315–1327.

Fankhauser, C. (2001) The phytochromes, a family of red/far-red absorbing photoreceptors. J. Biol. Chem. 276: 11453-11456.

Fujioka, S., and Sakurai, A. (1997) Biosynthesis and metabolism of brassinosteroids. Physiol. Plantarum 100: 710–715.

Furuya, M., and Song, P-S. (1994) Assembly and properties of holophytochrome. In Photomorphogenesis in Plants, 2nd ed., R. E. Kendrick and G. H. M. Kronenberg, eds., Kluwer, Dordrecht, Netherlands, pp. 105–140.

Green, R. M., and Tobin, E. M. (1999) Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. Proc. Natl. Acad. Sci USA 96: 4176-4170.

Hartmann, K. M. (1967) Ein Wirkungsspecktrum der Photomorphogenese unter Hochenergiebedingungen und seine Interpretation auf der Basis des Phytochroms (Hypokotylwachstumshemmung bei Lactuca sativa L.). Z. Naturforsch. 22b: 1172–1175.

Haupt, W. (1982) Light-mediated movement of chloroplasts. Annu. Rev. Plant Physiol. 33: 205–233.

Hershey, H. P., Barker, R. F., Idler, K. B., Lissemore, J. L., and Quail, P. H. (1985) Analysis of cloned cDNA and genomic sequences for phytochrome: Complete amino acid sequences for two gene products expressed in etiolated Avena. Nucleic Acids Res. 13: 8543–8558.

Hughes, J., Lamparter, T., Mittmann, F., Hartmann, E., Gaertner, W., Wilde, A., and Boerner, T. (1997) A prokaryotic phytochrome. Nature 386: 663.

Kehoe, D. M., and Grossman, A. R. (1996) Similarity of a chromatic adaptation sensor to phytochrome and ethylene receptors. Science 273: 1409–1412.

Kendrick, R. E., and Kronenberg, G. H. M., eds. (1994) Photomorphogenesis in Plants, 2nd ed. Kluwer, Dordrecht, Netherlands.

Kendrick, R. E., Kerckhoffs, L. H. J., Van Tuinen, A., and Koornneef, M. (1997) Photomorphogenic mutants of tomato. Plant Cell and Env. 20: 746–751.

Kim, H. Y., Cote, G. G., and Crain, R. C. (1993) Potassium channels in Samanea-Saman protoplasts controlled by phytochrome and the biological clock. Science 260: 960-962.

Konomi, K., Abe, H., and Furuya, M. (1987) Changes in the content of phytochrome I and II apoproteins in embryonic axes of pea seeds during imbibition. Plant Cell Physiol. 28: 1443–1449.

Kraml, M. (1994) Light direction and polarization. In Photomorphogenesis in Plants, 2nd ed., R. E. Kendrick and G. H. M. Kronenberg, eds., Kluwer, Dordrecht, Netherlands, pp. 417–445.

Kwok, S. F., Piekos, B., Miséra, S., and Deng, X-W. (1996) A complement of ten essential and pleiotropic Arabidopsis COP/DET/FUS genes is necessary for repression of photomorphogenesis in darkness. Plant Physiol. 110: 731–742.

Lee, Y., and Satter, R. L. (1988) Effects of temperature on proton uptake and release during circadian rhythmic movements of excised Samanea motor organs. Plant Physiol. 86: 352–354.

Lee, Y., and Satter, R. L. (1989) Effects of white, blue, red light and darkness on pH of the apoplast in the Samanea pulvinus. Planta 178: 31–40.

Li, J., and Chory, J. (1997) A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 90: 929–938.

Li, J., Nagpal, P., Vitart, V., McMorris, T., and Chory, J. (1996) A role for brassinosteroids in light-dependent development of Arabidopsis. Science 272: 398–401.

Mandava, N. B. (1988) Plant growth-promoting brassinosteroids. Annu. Rev. Plant Physiol. Plant Mol. Biol. 39: 23–52.

McNellis, T. W., and Deng, X-W. (1995) Light control of seedling morphogenetic pattern. Plant Cell 7: 1749–1761.

Montgomery, B. L., and Lagarias, J. C. (2002) The extended phytochrome family: Sensors of bilins and light. Trends in Plant Sciences: 7, in press.

Nagy, F., and Schäfer, E. (2000) Nuclear and cytosolic events of light-induced, phytochrome-regulated signaling in higher plants. EMBO J. 19: 157-163.

Nagy, F., Kay, S. A., and Chua, N.-H. (1988) A circadian clock regulates transcription of the cab-1 gene. Genes Dev. 2: 376–382.

Nakasako, M., Wada, M., Tokutomi, S., Yamamoto, K. T., Sakai, J., Kataoka, M., Tokunaga, F., and Furuya, M. (1990) Quaternary structure of pea phytochrome I dimer studied with small angle X-ray scattering and rotary-shadowing electron microscopy. Photochem. Photobiol. 52: 3–12.

Puente, P., Wei, N., and Deng, X-W. (1996) Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis. EMBO J. 15: 3732–3743.

Quail, P. H. (2000) Phytochrome-interacting factors. Seminars in Cell and Developmental Biology 11: 457-466.

Quail, P. H., Boylan, M. T., Parks, B. M., Short, T. W., Xu, Y., and Wagner, D. (1995) Phytochrome: Photosensory perception and signal transduction.Science 268: 675–680.

Quail, P. H., Briggs, W. R., Chory, J., Hangarter, R. P., Harberd, N. P., Kendrick, R. E., Koorneef, M., Parks, B., Sharrock, R. A., Schäfer, E., Thompson, W. F., and Whitelam, G. C. (1994) Spotlight on phytochrome nomenclature. Plant Cell 6: 468–471.

Rüdiger, W., and Thümmler, F. (1994) The phytochrome chromophore. In Photomorphogenesis in Plants, 2nd ed., R. E. Kendrick and G. H. M. Kronenberg, eds., Martinus Nijhoff, Dordrecht, Netherlands, pp. 51–69.

Sage, L. C. (1992) Pigment of the Imagination. A History of Phytochrome Research. Academic Press, San Diego.

Satter, R. L., and Galston, A. W. (1981) Mechanisms of control of leaf movements. Annu. Rev. Plant Physiol. 32: 83–110.

Schäfer, E., Apel, K., Batschauer, A., and Mösinger, E. (1986) The molecular biology of phytochrome action. In Photomorphogenesis in Plants, R. E. Kendrick, and G. H. M. Kronenberg, eds., Martinus Nijhoff, Dordrecht, The Netherlands, pp. 83–98.

Schneider-Poetsch, H. A. W. (1992) Signal transduction by phytochrome: Phytochromes have a module related to the transmitter modules of bacterial sensor protein. Photochem. Photobiol. 56: 839–846.

Shropshire, W., Jr., Klein, W. H., and Elstad, V. B. (1961) Action spectra of photomorphogenic induction and photoinactivation of germination in Arabidopsis thaliana. Plant Cell Physiol. 2: 63–69.

Siegelman, H. W., and Firer, E. M. (1964) Purification of phytochrome from oat seedlings. Biochemistry 3: 418–423.

Smith, H. (1982) Light quality photoperception and plant strategy. Annu. Rev. Plant Physiol. 33: 481–518.

Smith, H. (1995) Physiological and ecological function within the phytochrome family. Annu. Rev. Plant Physiol. Plant Mol. Biol. 46: 289–315.

Smith, H. (2000) Phytochromes and light signal perception by plants – an emerging synthesis. Nature 407: 585-691.

Terry, M. J., Wahleithner, J. A., and Lagarias, J. C. (1993) Biosynthesis of the plant photoreceptor phytochrome. Arch. Biochem. Biophys. 306: 1–15.

Terzaghi, W. B., and Cashmore, A. R. (1995) Light-regulated transcription. Annu. Rev. Plant Physiol. Plant Mol. Biol. 46: 445–474.

Thümmler, F., Dufner, M., Kreisl, P., and Dittrich, P. (1992) Molecular cloning of a novel phytochrome gene of the moss Ceratodon purpureus which encodes a putative light-regulated protein kinase. Plant Mol. Biol. 20: 1003–1017.

Tobin, E. M., and Kehoe, D. M. (1994) Phytochrome-regulated gene expression. Sem. Cell Bio. 5: 335–346.

Toole, E. H., Borthwick, H. A., Hendricks, S. B., and Toole, V. K. (1953) Physiological studies of the effects of light and temperature on seed germination. Proc. Int. Seed Test. Assoc. 18: 267–276.

Torii, K. U., and Deng, X. W. (1997) The role of COP1 in light control of Arabidopsis seedling development. Plant Cell Environ. 20: 728–733.

Vierstra, R. D., and Quail, P. H. (1983) Purification and initial characterization of 124-kilodalton phytochrome from Avena. Biochemistry 22: 2498–2505.

von Arnim, A. G., and Deng, X-W. (1994) Light inactivation of Arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partitioning. Cell 79: 1035–1045.

Wagner, G. (1996) Intracellular movement. Prog. Bot. 57: 68–80.

Wang, Z-Y., Kenigsbuch, D., Sun, L., Harel, E., Ong., M. S., and Tobin, E. M. (1997) A MYB-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell 9: 491–507.

Whitelam, G. C., and Halliday, K. J. (1999) Photomorphogenesis: Phytochrome takes a partner! Curr. Biol. 9: R225-R227, CP1.

Winands, A., and Wagner, G. (1996) Phytochrome of the green alga Mougeotia: cDNA sequence, autoregulation and phylogenetic position. Plant Mol. Biol. 32: 589–597.

Wong, Y-S., McMichael, R. W., Jr., and Lagarias, J. C. (1989) Properties of a polycation-stimulated protein kinase associated with purified Avena phytochrome. Plant Physiol. 91: 709–718.

Wu, Y., Hiratsuka, K., Neuhaus, G., and Chua, N-H. (1996) Calcium and cGMP target distinct phytochrome-responsive elements. Plant J. 10: 1149–1154.

Yeh, K.-C., and Lagarias, J.C. (1998) Eukaryotic phytochromes: light regulated serine/threonine protein kinases with histidine kinase activity. Proc. Natl. Acad. Sci. USA 95: 13976-13981.

Yeh, K-C., Wu, S-H., Murphy, J. T., and Lagarias, J. C. (1997) A cyanobacterial phytochrome two-component light sensory system. Science 277: 1505–1508.

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